Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015945014.1_cds_XP_016487689.1_78393
CDS Infomation

[gene=LOC107807763] [db_xref=GeneID:107807763] [protein=RNA polymerase sigma factor sigF, chloroplastic-like] [protein_id=XP_016487689.1] [location=join(9507..9606,12157..12308,12511..12638,12747..12953,13046..13316,13404..13634,13811..13951,14038..14238,15222..15509)] [gbkey=CDS]
Sequence

ATGGAGGCAGCTGGAAGAAACTTGCTTTCTTCACCACCAACAACTTTTTCTCATAAAACC
CAATTCAGCAGAAGTTCCCCTTCTTCCATTTCCTCTTCGGTTCTGATGCTTTATGAGCAT
GTTGCTCCTGGGCTTACTTCAGTGCCACATGCTTATTTGGCTCGACATGTTCCTGCATCA
GTTATCAATCCGGAGCAGCAGTTTGAGAATCGGCTGCAATTGCACACAGTGAAGAAAGAG
AAAACATCCCTTGCAACAATAGATAGGAGGCTTGTGGAAGCTGCATCCTCAGCAATGGAA
GAGAATGACGCTGTTGATTCGGAGCAAAATATAAATGTTTTGCAAGTGCAGCTACTTCGT
TCGCCTGGTCTATCATATTTATTTTCGTCATATCATCTGAAGGAAAAAAGACCACTAACT
CTGGATACGGAATCTCTTTCCGACAAGGGAGAGAAATTAATGAACTTTGAACCAGAGAGC
GTGGTTGCTCTTGCCAGAAAGGCTTTGTTGGCATCAAGAGAGGCAGCTTTATTAGCTGAG
GACTCCAAATTACTTGAGACTAACTTCGATGACTCTATTTTTCCAAATTTGCTGTCCACA
AATTTGACTGATGATAAGCTGAAAGACCAAAAAACAGTGAGGTCAACACGTTTTCTAGAG
AGGCGTTCTAAGAGAAGGGGAGTTCCAACACCAAAACATCAAGTTCAGGAGACAAATCGT
TCAGAAAGGCCAGATGTGCGGAGAAGAGTGAAAGAATCTATTGACCTAAATGATCCTCTC
CGAATGTTTCTATGGGGTCCTGAAACTAAACAACTTTTAACAGTCAAAGAGGAGTCTGAA
TTGATTGTCAAGATACAGAATACCATGAAATTACAAGAAGTGAAGCATCGGCTTCAAACT
CAGTTTGATCGTGAACCGACATTGATCGAGTGGGCTGAAGCTGCAGGACTTACTTCTCGA
GAATTGCAGTCACAGCTTCGTTCTGGCAAGAGCAGCCGTGACAAATTAATTAACGCCAAT
TTGCGAATGGTGGTTCATATTGCTAAGCAATATCAAGGGCGCGGTCTCAGCCTTCAGGAT
TTATTGCAGGAGGGAAGCGTGGGACTTATGAAGAGTGTCGAGAAGTTCAAGCCTCAAGCT
GGTTGCCGATTTCCCACCTACGCATACTGGTGGATAAGGCAAGGAGTTAGGAAGGCCATA
TTTCAACATTCTAGGACAATTCGTTTGCCAGAAAATGTGTATGCCCTACTCTCTAAGGTA
AAAGACGCCAAAAAGTTATGCATCCAACAAGGTAATCGTCATCCAACCAGAGAAGACATT
GCTTCATGCGCTGGAATGAGTGTGGAAAGGTTGCAGAGTCTGCTTTCTGCGGCTAGAACA
CCTCTTTCAATGCAACAGTCAGTGTGGACAGATCAAGATACTACTTTCCAGGAAATTACT
GCTGACAGTGCAATTGAAGCACCAGAACTGAGTGTATCAAAGCAACTTATGAGGCGACAC
ATACGTAACCTCCTAAATGTTCTGAATCCAAAGGAGAGGAAAATAATCCGACTTAGATTT
GGCATTGGAGATGGTAAACGGAAGTCGCTCTCCGAAATAGGTGCTGTTTTTGGACTCTCA
AAGGAGCGAGTTCGACAGTTGGAGAGTCGGGCACTATACAAGCTAAAGAAGAATCTTAGC
AGCCATGGGCTTGATGCCTATAGTGATTTGCTCTTTTAG

Peptide Sequence

PEP ID

XP_016487689.1
PEP Infomation

PREDICTED: RNA polymerase sigma factor sigF, chloroplastic-like [Nicotiana tabacum]
Sequence

MEAAGRNLLSSPPTTFSHKTQFSRSSPSSISSSVLMLYEHVAPGLTSVPHAYLARHVPAS
VINPEQQFENRLQLHTVKKEKTSLATIDRRLVEAASSAMEENDAVDSEQNINVLQVQLLR
SPGLSYLFSSYHLKEKRPLTLDTESLSDKGEKLMNFEPESVVALARKALLASREAALLAE
DSKLLETNFDDSIFPNLLSTNLTDDKLKDQKTVRSTRFLERRSKRRGVPTPKHQVQETNR
SERPDVRRRVKESIDLNDPLRMFLWGPETKQLLTVKEESELIVKIQNTMKLQEVKHRLQT
QFDREPTLIEWAEAAGLTSRELQSQLRSGKSSRDKLINANLRMVVHIAKQYQGRGLSLQD
LLQEGSVGLMKSVEKFKPQAGCRFPTYAYWWIRQGVRKAIFQHSRTIRLPENVYALLSKV
KDAKKLCIQQGNRHPTREDIASCAGMSVERLQSLLSAARTPLSMQQSVWTDQDTTFQEIT
ADSAIEAPELSVSKQLMRRHIRNLLNVLNPKERKIIRLRFGIGDGKRKSLSEIGAVFGLS
KERVRQLESRALYKLKKNLSSHGLDAYSDLLF

Transcript Sequence

Gene sequence data has not been registered.